PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0173.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 289aa    MW: 32449 Da    PI: 8.8937
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0173.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.4e-28128186259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkk+v+rs ed+ ++++ Yeg+Hnh 
  Kaladp0001s0173.1.p 128 RDGYQWRKYGQKVTKDNPSPRAYFRCAMApTCPVKKRVQRSVEDEMILVVSYEGHHNHG 186
                          7***************************99****************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-27122187IPR003657WRKY domain
SuperFamilySSF1182903.14E-24124186IPR003657WRKY domain
SMARTSM007741.7E-32127187IPR003657WRKY domain
PROSITE profilePS5081124.363129188IPR003657WRKY domain
PfamPF031061.6E-23129185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRVSNLLDSE MVKITMDEGV VEEMRKENAR LRNIVKHLQG EADDGMGRKR RAAAAALDDD  60
YQLIMMQPYG GSSSMSDDYC YGASAMMNNG VKRPRMMRGL QVPTMGGSKA YQMFVRTHDN  120
KDKSLTVRDG YQWRKYGQKV TKDNPSPRAY FRCAMAPTCP VKKRVQRSVE DEMILVVSYE  180
GHHNHGKITP EPECLPIQAP ENGATIHMSP FDRPAVTLDL SLSGPSSSGK TDQETRSCRR  240
NLFNKSDEFM NEEIVKEYVA SLTRDPNFSM ALAMAVARSI PDMSARRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181271851471WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443387.16e-52PREDICTED: probable WRKY transcription factor 40
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-39WRKY DNA-binding protein 18